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Pairwise Align DNA
Format Conversion
Sequence Analysis
Sequence Figures
Random Sequences
Miscellaneous

DNA/cDNA/RNA/Genome/Genomics/Bioinformatics Tools:
Pairwise Align DNA accepts two DNA sequences and determines the optimal global alignment.

Pairwise Align DNA accepts two DNA sequences and determines the optimal global alignment. Use Pairwise Align DNA to look for conserved sequence regions.


Pairwise Align DNA


Paste sequence one (in raw sequence or FASTA format) into the text area below. Input limit is 20,000 characters



Paste sequence two (in raw sequence or FASTA format) into the text area below. Input limit is 20,000 characters.


Use the following parameters to specify how alignments are scored.
  • Match value
  • Mismatch value
  • Value for gaps preceding a sequence
  • Value for internal gaps
  • Value for gaps following a sequence







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